Artificial Intelligence for Early Drug Discovery, August 26-27 2020, San Diego, CA

Cambridge Healthtech Institute’s 2nd Annual

Artificial Intelligence for Early Drug Discovery

AI & Machine Learning for Drug Design and Lead Optimization

AUGUST 26-27, 2020 - ALL TIMES EASTERN DAYLIGHT (UTC-04:00)

The Artificial Intelligence for Early Drug Discovery conference will bring together a diverse group of experts from bioinformatics, chemistry, target discovery, DMPK, and toxicology to talk about the increasing use of computational tools, artificial intelligence (AI) models, machine learning (ML) algorithms, and data mining in preclinical drug development. Starting with an overview of current challenges and opportunities, the talks will highlight how AI/ML can help with drug design, target identification, lead optimization, PK/PD predictions, and early safety assessments. The speakers will offer insights into the caveats and limitations of AI/ML-based decision-making using relevant case studies and research findings. The conference will offer an excellent opportunity to network and share ideas and best practices.

Wednesday, August 26

11:45 am Recommended Short Course*
SC8: Targeted Protein Degradation Using PROTACs, Molecular Glues, and More

*Premium VIRTUAL Pricing or separate registration required. See short course page for details.

EMERGING APPLICATIONS OF AI/ML PREDICTIONS

1:50 pm

Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions

Arvind Rao, PhD, Associate Professor, Department of Computational Medicine and Bioinformatics, University of Michigan

We propose a novel in silico drug discovery approach to identify kinase targets that impinge on nuclear receptor signaling with data generated using high-content analysis (HCA). Using imaging-derived descriptors, we provide prediction results of drug-kinase-target interactions based on single-task learning, multi-task learning, and collaborative filtering methods. These promising results suggest that imaging-based information can be used as an additional source of information for existing virtual screening methods, thereby making the drug discovery process more time and cost efficient.

2:10 pm

New Anti-Cancer Peptide Design Using a GAN-Based Deep Learning Method

Wenjin Zhou, PhD, Assistant Professor, Computer Science, University of Massachusetts Lowell

Cancer is a deadly disease that causes an estimated 9.6 million deaths a year. Pharmaceutical drugs are important but developing new drugs is difficult and expensive. Here we generate a new peptide for PD-1, which is closely linked to a wide variety of cancers, using a new application called GANDALF to design new peptides. We present a peptide generated by our prototype to bind with PD1 and compare it to FDA approved drugs and results from a comparable method, Pepcomposer.

2:30 pm

Deep Generative Autopilot for the Real-world Design of Novel Lead Compounds

Sang Ok Song, PhD, Co-Founder & Chief Transformation Officer, Standigm, Inc.

Standigm has applied deep generative models to design novel therapeutic compounds and launched Standigm BEST®, a proprietary molecular generative platform for lead discovery and optimization. On top of the main molecular generative algorithm, we developed an automated molecular design workflow to optimize and prioritize machine generated compounds for further synthesis and experimental validation. The most recent progress including real-life case studies will be shared.

Achintya Das, Deputy Research Director, Research Informatics, Syngene International Ltd


Decisions taken in early drug discovery, from target selection to selecting the right chemical series greatly impact late stage attrition. We have developed data driven workflows that integrate heterogeneous data for target selection, lead identification and optimization in a holistic manner.This leads to better predictability and targeted experimentation.
 

3:10 pm LIVE PANEL:

Q&A with Session Speakers

Panel Moderator:
Arvind Rao, PhD, Associate Professor, Department of Computational Medicine and Bioinformatics, University of Michigan
Panelists:
Wenjin Zhou, PhD, Assistant Professor, Computer Science, University of Massachusetts Lowell
Sang Ok Song, PhD, Co-Founder & Chief Transformation Officer, Standigm, Inc.
Achintya Das, Deputy Research Director, Research Informatics, Syngene International Ltd
3:30 pm Happy Hour - View our Virtual Exhibit Hall
4:15 pm Close of Day

Thursday, August 27

10:00 am

PLENARY KEYNOTE: Translational Chemistry

Phil S. Baran, PhD, Chair & Professor, Chemistry, Scripps Research Institute

There can be no more noble undertaking than the invention of medicines. Chemists that make up the engine of drug discovery are facing incredible pressure to do more with less in a highly restrictive and regulated process that is destined for failure more than 95% of the time. How can academic chemists working on natural products help these heroes of drug discovery – those in the pharmaceutical industry? With selected examples from our lab and others, this talk will focus on that question highlighting interesting findings in fundamental chemistry and new approaches to scalable chemical synthesis.

10:30 am LIVE Q&A:

Plenary Discussion

Panel Moderator:
Daniel A. Erlanson, PhD, Vice President, Chemistry, Frontier Medicines Corp.
Panelist:
Phil S. Baran, PhD, Chair & Professor, Chemistry, Scripps Research Institute
11:00 am Interactive Breakout Discussions OR View our Virtual Exhibit Hall

In the breakout session, attendees join a Zoom Room discussion. Each room will have a moderator to ensure focused conversations around key issues within the topic. The small group format allows participants to informally meet potential collaborators, share examples from their work, and discuss ideas with peers. Attendees will have the ability to turn their camera and microphones on or off and  the session will NOT be recorded NOR available On Demand.

Topic: AI-Driven Target Discovery and Therapies

Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego
  • Types of AI models predicting individual target activities of small molecules
  • May the docking be a useful intermediate step before the AI model is applied?
  • How under-characterized is the set of activities of small molecule therapeutics and drug candidates?

Topic: Trends in AI for Accelerating Drug Discovery

Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan
  • Current trends for the application of AI towards preclinical drug discovery, status and challenges
  • What measures should be taken to invest and apply AI at various stages of drug development?
  • Industry-Academia partnerships, shared experience from startups, academia and impact assessment

AI FOR DRUG & TARGET DISCOVERY

11:35 am

AI for Accelerated Preclinical Drug Discovery: From Data Mining to Screening Automation

Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan

This presentation will focus around the role of life sciences big data, technologies and emerging application of AI for the early drug discovery. The case studies discussing the impact of automation and miniaturization approaches coupled with machine learning on the speed and efficiency for the compound screening will be discussed. Additionally, a brief assessment of the therapeutics area-wise activity, current trends will be provided.

Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego

Computer models that are capable of predicting several thousands of biological activities for any chemical along with their ADMET properties have improved dramatically with the rapid growth of experimental data. The resulting network, illustrated by cancer drugs, has an extensive multi-target profile for each drug. These models use different mathematical methods, and help to predict new targets for known compounds, repurpose to new indications, search for compounds with specific multi-target profile, or identify potential liabilities.

Whitney Smith, Director, Business Development, Collaborative Drug Discovery

Easy; Secure; Collaborative.  As the industry’s most trusted cloud-based drug discovery data management platform, CDD Vault has provided a secure, performant solution for early-stage research informatics for over 15 years.  Now, CDD has brought that same philosophy and expertise to the field of semantic drug content data and assay metadata with our new BioHarmony platform.  Speed up your drug discovery process with structured FAIR data - standardized, up to date, and ready to use

12:55 pm LIVE PANEL:

Q&A with Session Speakers

Panel Moderator:
Amol Jadhav, PhD, Industry Consultant, Transformational Health, Frost & Sullivan
Panelists:
Ruben Abagyan, PhD, Professor, Molecular Biology, University of California San Diego
Whitney Smith, Director, Business Development, Collaborative Drug Discovery
1:15 pm Lunch Break - View our Virtual Exhibit Hall

USE OF AI/ML TO PREDICT ADME & DRUG SAFETY

S. Joshua Swamidass, Associate Professor, Pathology & Immunology, Washington University

We have been building artificial intelligence models of metabolism and reactivity. Metabolism can both render toxic molecules safe and safe molecules toxic. The artificial intelligence models we use quantitatively summarize the knowledge from thousands of published studies. The hope is that we could more accurately modeling the properties of medicines, to determining whether metabolism renders drugs toxic or safe. This is just one of many places where artificial intelligence could give traction on the difficult questions facing the industry.

Yugal Sharma, Senior Director, Custom Solutions, CAS

Better data is an obvious need for improved AI predictions, but have you considered the role of chemical descriptors?  See how better descriptors improve predictions across multiple algorithms. This study by Dr. Alpha Lee (University of Cambridge) was peer reviewed and accepted at the Journal of Chemical Information and Modeling. 

2:45 pm

Q&A with Session Speakers

Panel Moderator:
S. Joshua Swamidass, Associate Professor, Pathology & Immunology, Washington University
Yugal Sharma, Senior Director, Custom Solutions, CAS
3:10 pm Close of Conference
SC14: Ligand-Receptor Molecular Interactions and Drug Design (LIVE ONLY)

*Premium VIRTUAL Pricing or separate registration required. See short course page for details.